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Bruno Villoutreix’s AI-Biotech-Studio
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⏳ 5-Minute Guides to AI in Drug Discovery & Productivity Tools

This channel and the VLS3D.com directory (updated weekly) work hand-in-hand to help academic scientists and biotech entrepreneurs efficiently screen and integrate the latest computational tools into their research pipelines.

⚖️ A Hype-Free Zone:
No hype - just real science. e,.g, AlphaFold predicts structures, not the full folding process. That distinction matters.

📌 Background: Director of Research based in Paris (~250 articles, 16 patents, 15k citations, a compound in phase II...). This channel is the video companion to VLS3D, my repository of 5,000+ software packages and databases for early-stage drug discovery.

What you will find:
🔹 VLS3D Highlights: videos featuring a curated selection of tools from VLS3D.
🔹 Code to Drug Candidate: technical tutorials.
🔹 Beyond the Bench: general AI tools for research & productivity.

⚠️ Content combines human scientific expertise with AI assistance. Opinions are my own.


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3:50

ErePOC: AI to search for DNA-encoded library compatible binding pockets

Bruno Villoutreix’s AI-Biotech-Studio

Shared 1 month ago

69 views

20:41

A Short Overview of AI Trends in Drug Discovery - 2026+

Bruno Villoutreix’s AI-Biotech-Studio

Shared 1 month ago

530 views

6:23

AgentD: The AI Agent Helping Scientists Discover New Drug Candidates

Bruno Villoutreix’s AI-Biotech-Studio

Shared 2 months ago

76 views

2:12

Clean SMILES Data Easily with MEHC-curation

Bruno Villoutreix’s AI-Biotech-Studio

Shared 2 months ago

49 views

2:59

DataWarrior Meets AI: LLM Tool-Calling with an MCP Server

Bruno Villoutreix’s AI-Biotech-Studio

Shared 2 months ago

97 views

3:51

Off-Target Profiling and Drug Repurposing Made Easy with ProfhEX

Bruno Villoutreix’s AI-Biotech-Studio

Shared 2 months ago

41 views

2:04

I Tried Making a Micro Science Lesson With Google Flow

Bruno Villoutreix’s AI-Biotech-Studio

Shared 2 months ago

12 views

6:37

What’s New in Chemoinformatics? Quick Highlights from the SFCi Meeting (Paris, Dec 2025)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 4 months ago

122 views

8:01

Protein Sequence Extended-Connectivity Fingerprints to Analyze Mutation and for Machine Learning

Bruno Villoutreix’s AI-Biotech-Studio

Shared 5 months ago

98 views

6:59

Simulated Solute Tempering-2

Bruno Villoutreix’s AI-Biotech-Studio

Shared 5 months ago

26 views

4:16

VLS3D.com: a repository of tools to assist early-stage drug discovery

Bruno Villoutreix’s AI-Biotech-Studio

Shared 5 months ago

111 views

5:46

CovalentLab: One-Shot Rational Design of Covalent Drugs

Bruno Villoutreix’s AI-Biotech-Studio

Shared 6 months ago

83 views

14:05

Exploring missense mutations in patients with the Flower-Donut Traffic Light Plot

Bruno Villoutreix’s AI-Biotech-Studio

Shared 6 months ago

37 views

9:21

Can AI Really Predict ADMET Properties? Well, it depends how you look at it.

Bruno Villoutreix’s AI-Biotech-Studio

Shared 6 months ago

81 views

4:18

VeGA: A Transformer-Based Tool for Generative Chemistry

Bruno Villoutreix’s AI-Biotech-Studio

Shared 6 months ago

134 views

5:56

TAME-VS: End-to-End Virtual Screening in Python

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

106 views

1:46

MinerU2.5: New Preprint Brings LLM Power to PDF Parsing

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

175 views

1:22

AI Designs Viruses?

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

455 views

2:48

AI Tools for Slide Presentations: Kimi Slides

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

249 views

5:57

Protein-Ligand Docking in DataWarrior: A Simple Example (part 9)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

342 views

5:20

Exploring Evolutionary Libraries in DataWarrior (part 8)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 7 months ago

311 views

4:28

ChemBounce: Scaffold Hopping Tool for Drug Discovery

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

347 views

11:00

Introduction to Core-Based SAR in DataWarrior (part 7)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

603 views

5:12

My AI & Computer Modeling Drug Discovery Reading List - Summer 2025

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

159 views

5:51

AI-Powered Peptide Toxicity Prediction: ToxMSRC

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

105 views

1:15

IBM Docling: AI-Powered Text Extraction from Documents

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

382 views

6:16

LangExtract: Turning Unstructured Text into Insights for Drug Discovery, Medical Research and Beyond

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

514 views

18:07

Introduction to DataWarrior (part 6)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 8 months ago

520 views

7:53

Introduction to DataWarrior (part 5)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

410 views

2:44

AccFG: a Functional Group Detective

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

81 views

7:53

Introduction to DataWarrior (part 4)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

733 views

3:20

Introduction to DataWarrior (part 3)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

633 views

5:22

Build LLMs From Scratch

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

81 views

14:00

Introduction to DataWarrior (part 2)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

1.1K views

9:41

Introduction to DataWarrior (part 1)

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

2.1K views

7:39

PEGASUS: Prediction of Protein Flexibility from Amino-Acid Sequence

Bruno Villoutreix’s AI-Biotech-Studio

Shared 9 months ago

91 views

3:44

Network Medicine and the NetMedPy Python package.

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

103 views

4:50

OncoPPI-pocketome, ligandable binding pockets in cancers

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

126 views

3:49

Dragonfly, a deep learning framework to generate new molecules

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

187 views

1:05

Binding affinity prediction with Boltz-2?

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

329 views

3:34

Peptide Generation with LSTM and Attention Models

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

58 views

2:24

E3Docker and PROteolysis TArgeting Chimera

Bruno Villoutreix’s AI-Biotech-Studio

Shared 10 months ago

17 views

3:47

Green algorithms

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

62 views

6:53

VTX: Real-Time Molecular Structure & Dynamics Visualization

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

67 views

4:03

The new PubMed: PubMed AI for biomedical literature search

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

751 views

2:52

Heatmap online

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

53 views

6:59

DeepBioisostere and hit2lead

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

32 views

3:02

ToxTeller for peptide toxicity prediction

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

106 views

6:36

DDGemb (delta-deltaG) to analyze mutations

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

26 views

6:06

TeachOpenCADD tutorials: Open Source and FAIR Python Pipelines for Computer-Aided Drug Design

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

253 views

7:20

XGBMut: Predicting the Functional Impact of Missense Mutations

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

29 views

5:09

LightRAG - Retrieval-Augmented Generation

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

319 views

8:11

BioNavi: Hybrid Retrosynthesis Planning

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

28 views

6:15

ADMET prediction boosted by AutoML

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

82 views

7:19

Agent2Agent and Model Context Protocol (MCP) Framework

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

162 views

6:43

Regression-Based Active Learning Docking

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

52 views

5:04

Gnina docking tool 1.3 (2025) with covalent docking

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

756 views

5:12

KarmaDock a new approach for protein-ligand docking

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

100 views

6:39

Mutation analysis with the RSALOR software package

Bruno Villoutreix’s AI-Biotech-Studio

Shared 11 months ago

133 views