Scientific Illustrations

15:18

Cell phases assignment in Seurat, compare with cell phases done in Scran. Use confusion matrix

Shared 1 week ago

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14:39

Use ternary plot to show cell cycle phases

Scientific Illustrations

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12:36

A treemap. What it is and how to use it

Scientific Illustrations

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13:34

Ternary (triangle) plot. What is it and how to read it?

Scientific Illustrations

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16:05

Coverage Plot. Multiple functions in R showing genome coverage

Scientific Illustrations

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15:33

Descriptive statistics in ChIPpeakAnno

Scientific Illustrations

Shared 4 months ago

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2:57

How I did my videos in 2025

Scientific Illustrations

Shared 5 months ago

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9:10

Custom annotation in ChIPpeakAnno

Scientific Illustrations

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17:13

DEScan2: a good alternative to DiffBind package.

Scientific Illustrations

Shared 6 months ago

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15:14

UpSet plot. What it is and how to make it.

Scientific Illustrations

Shared 7 months ago

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10:23

1.9.Removing duplicates from fastq files

Scientific Illustrations

Shared 8 months ago

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6:51

Step Line plot as a substitute for the barplot() in R

Scientific Illustrations

Shared 9 months ago

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10:48

1.8. Add your favourite Venn (Eulerr) to ChIPpeakAnno

Scientific Illustrations

Shared 9 months ago

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8:46

1.7. Read and write files in loop in R

Scientific Illustrations

Shared 10 months ago

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10:10

1.6. BedTools for differential analysis?

Scientific Illustrations

Shared 10 months ago

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10:04

1.5. Add more details to IGV

Scientific Illustrations

Shared 11 months ago

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11:32

Make Venn from bed files with ChIPpeakAnno

Scientific Illustrations

Shared 1 year ago

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16:08

1.4. Making average (most consistent) BED file using Bedtools

Scientific Illustrations

Shared 1 year ago

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11:10

1.3. Convert BAM file into BigWig and make average tracks (of BAM files) for IGV viewer

Scientific Illustrations

Shared 1 year ago

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15:59

1.2. Diffbind. What you need (BAM, BED files: where to get them) and minimal protocol

Scientific Illustrations

Shared 1 year ago

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11:17

1.1. Making BED files with MACS3 in python

Scientific Illustrations

Shared 1 year ago

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11:57

1.0. Sort and index your BAM files using script and samtools

Scientific Illustrations

Shared 1 year ago

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10:58

0.9. Visualize BAM file in IGV viewer in macOS

Scientific Illustrations

Shared 1 year ago

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11:29

0.8. Fix broken fastq.gz file

Scientific Illustrations

Shared 1 year ago

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8:48

0.1. An introduction to the Single Cell RNAseq

Scientific Illustrations

Shared 1 year ago

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8:05

0.7. Map multiple fastq files with rsubread

Scientific Illustrations

Shared 1 year ago

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11:28

0.6. Map fastq files with Rsubread

Scientific Illustrations

Shared 1 year ago

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4:39

0.5. Make fastqc and multiqc reports in one python script

Scientific Illustrations

Shared 1 year ago

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1:01

Happy New Year with python

Scientific Illustrations

Shared 1 year ago

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12:27

0.4. Run multiQC with python

Scientific Illustrations

Shared 1 year ago

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15:54

0.3. Two ways of using fastqc to generate quality report of your fastq files

Scientific Illustrations

Shared 1 year ago

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14:22

0.2. Download multiple files from SRA using shell script in macOS

Scientific Illustrations

Shared 1 year ago

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12:43

0.1. FASTQ from NCBI SRA

Scientific Illustrations

Shared 1 year ago

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13:08

1.11. CEL files in limma GEO2R script

Scientific Illustrations

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11:13

1.10. Multiple groups and contrasts in limma

Scientific Illustrations

Shared 1 year ago

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15:40

3.3. Time in DESeq2

Scientific Illustrations

Shared 1 year ago

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9:59

6.1. Convert your Rmd script into a good looking report

Scientific Illustrations

Shared 1 year ago

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20:31

3.2. Using time (age) scale in limma

Scientific Illustrations

Shared 1 year ago

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14:35

3.1. edgeR with real age and gender. Will it work?

Scientific Illustrations

Shared 1 year ago

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16:28

3.0. Using time scale in edgeR differential expression protocol

Scientific Illustrations

Shared 1 year ago

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5:46

Install Hisat2 mapping program on your Mac

Scientific Illustrations

Shared 1 year ago

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12:32

2.3. EnhancedVolcano and other Volcano plots

Scientific Illustrations

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1:26

2.2. My scripts on GitHub

Scientific Illustrations

Shared 1 year ago

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17:19

2.1. DEGreport for DESeq2

Scientific Illustrations

Shared 1 year ago

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17:27

2.0. Interactive illustrations in Glimma

Scientific Illustrations

Shared 1 year ago

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16:52

1.9. DESeq2 improved and with illustrations

Scientific Illustrations

Shared 1 year ago

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9:39

1.8. DESeq2 in GEO2R

Scientific Illustrations

Shared 1 year ago

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11:19

1.7. Recap of edgeR protocols.

Scientific Illustrations

Shared 1 year ago

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15:19

1.6. Alternative glmFit based edgeR protocol

Scientific Illustrations

Shared 2 years ago

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13:51

1.5. Classic edgeR protocol with one factor

Scientific Illustrations

Shared 2 years ago

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15:52

1.4. Quick Start edgeR protocol with figures. Script based on the edgeR Quick Start lines

Scientific Illustrations

Shared 2 years ago

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14:12

1.3.Quick Start edgeR. A protocol based on the Quick Start chapter in the edgeR users guide.

Scientific Illustrations

Shared 2 years ago

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14:03

1.2.limma edgeR voom

Scientific Illustrations

Shared 2 years ago

429 views

20:45

1.1. limma-edgeR script. 2nd version. Major lines taken from limma tutorial

Scientific Illustrations

Shared 2 years ago

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12:26

1.0. Introduction to RNAseq expression data and scripts

Scientific Illustrations

Shared 2 years ago

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15:14

0.8. voom or vooma? What is it and how to use it in gene expression analysis

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Shared 2 years ago

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11:33

0.7. Strange microarrays

Scientific Illustrations

Shared 2 years ago

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7:29

Installing STAR on Mac

Scientific Illustrations

Shared 2 years ago

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8:26

Do not drink raw milk

Scientific Illustrations

Shared 2 years ago

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11:47

0.6. Comments to limma tutorial

Scientific Illustrations

Shared 2 years ago

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