A small mystery solved (EOS S2E27 recap)

How well does the current version of ESGS really work? (EOS E2S26 recap)

Eating your own dog food does lead to better foo (EOS S2E25 recap)

Off by a factor of three (EOS S2E24 recap)

Better is better (EOS S2E20 recap)

SemiBin version 2.2.0 released

How to install SemiBin using pixi (including GPU support)

The calm after the storm (EOS S2E19 recap)

A week of consolidation (EOS S2E18 recap)

A trick to get "deterministic random choices"

Scaling up (EOS S2E17 recap)

Expanding our genome set, building up to everything (EOS S2E16 recap)

Progress towards a score (EOS S2E15 recap)

EOS S2E12 pseudo-stream

Better reference, better results? (EOS S2E11 recap)

Splitting files for robustness (EOS S2E10 recap)

Waiting for Godot (DIAMOND), EOS S2E9 recap

Back from travel, looking at outliers (EOS, S2E8 recap)

Sustainable Research Software

Macrel 1.4.0. Querying the global AMPSphere

Comparing oranges to mandarines (EOS S2E7 recap)

Fumbling around, finding patterns (EOS S2E6 recap)

June 2024 quarterly updates

A mystery solved and everything is back to normal (EOS S2E5 recap)

Some very strange results: there is a bug somewhere (EOS S2E4 recap)

Advanced use of Jug to load data from a jugfile (EOS S2E3 extra content)

checkM2 completeness metrics do pick up simulated mutations (EOS S2E3 recap)

A few mutations are enough to make genes noticeably smaller (EOS S2E2 recap)

Extremely Open Science Season 2 Episode 1 recap

SemiBin2 Tutorial

Open Office Hours: April 24 & May 9

EOS 4 recap

Extremely Open Science Recap 3

Extremely Open Science. Stream 2 recap

Extremely Open Science Stream 1 Recap

Extremely Open Science Part 1 : introduction

argNorm Tutorial

NGLess one liners

SemiBin2: Self-supervised learning for binning (ISMB/ECCB2023)

Get eggnog-mapper annotations for GMGC data

How to retrieve amino acid versions of GMGC unigenes for subcatalogs

How to install bioinformatics software with mamba (faster version of conda)

How to give a scientific presentation (talk)

Semi- and self-supervised learning for metageonmics binning with SemiBin

How to select rows from very large tables with Pandas — handling the GMGC abundance table

Building MAGs (metagenome-assembled genomes) from multiple metagenomes using SemiBin

Assembling multiple metagenomes using NGLess

Using Jug to parallelize computations in Python

The GMGC as a window into the global microbiome

Finding antimicrobial peptides in metagenomes using macrel (on the command line)

Retrieving MAGs from GMGCv1 using Python

SemiBin Tutorial: building MAGs from metagenomes (English)

SemiBin Tutorial (Deutsch)

SemiBin Tutorial (French)

SemiBin Tutorial (Portuguese)

NGLess tutorial: assembling metagenomes (FRANÇAIS)

Assembling metagenomes using NGLess (ENGLISH)

NGLess tutorial: assembling metagenomes (DEUTSCH)

NGLess tutorial: assembling metagenomes (PORTUGUÊS)

Making SemiBin faster III: test against the older version